The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758

Angus I. Carpenter; Michelle Smith; Craig Corton; Karen Oliver; Jason Skelton; Emma Betteridge; Jale Doulcan; Michael A. Quail; Shane A. McCarthy; Marcela Uliano Da Silva; Kerstin Howe; James Torrance; Jonathan Wood; Sarah Pelan; Ying Sims; Francesca Floriana Tricomi; Richard Challis; Jonathan Threlfall; Daniel Mead; Mark Blaxter

doi:10.12688/wellcomeopenres.16753.1

The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758

Angus I. Carpenter
, Michelle Smith
, Craig Corton
, Karen Oliver
, Jason Skelton
, Emma Betteridge
, Jale Doulcan
, Michael A. Quail
, Shane A. McCarthy
, Marcela Uliano Da Silva
, Kerstin Howe
, James Torrance
, Jonathan Wood
, Sarah Pelan
, Ying Sims
, Francesca Floriana Tricomi
, Richard Challis
, Jonathan Threlfall
, Daniel Mead
, Mark Blaxter

University of Cumbria

Research output: Contribution to journal › Journal Article › peer-review

Abstract

We present a genome assembly from an individual male Arvicola amphibius (the European water vole; Chordata; Mammalia; Rodentia; Cricetidae). The genome sequence is 2.30 gigabases in span. The majority of the assembly is scaffolded into 18 chromosomal pseudomolecules, including the X sex chromosome. Gene annotation of this assembly on Ensembl has identified 21,394 protein coding genes.

Original language	English
Pages (from-to)	162
Journal	Wellcome Open Research
Volume	6
DOIs	https://doi.org/10.12688/wellcomeopenres.16753.1
Publication status	Published - 24 Jun 2021

Keywords

chromosomal
European water vole
Arvicola amphibius
genome sequence

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Carpenter TheGenomeSequenceOther version, 2.65 MB

https://doi.org/10.12688/wellcomeopenres.16753.1

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Carpenter, A. I., Smith, M., Corton, C., Oliver, K., Skelton, J., Betteridge, E., Doulcan, J., Quail, M. A., McCarthy, S. A., Uliano Da Silva, M., Howe, K., Torrance, J., Wood, J., Pelan, S., Sims, Y., Tricomi, F. F., Challis, R., Threlfall, J., Mead, D., & Blaxter, M. (2021). The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758. Wellcome Open Research, 6, 162. https://doi.org/10.12688/wellcomeopenres.16753.1

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title = "The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758",

abstract = "We present a genome assembly from an individual male Arvicola amphibius (the European water vole; Chordata; Mammalia; Rodentia; Cricetidae). The genome sequence is 2.30 gigabases in span. The majority of the assembly is scaffolded into 18 chromosomal pseudomolecules, including the X sex chromosome. Gene annotation of this assembly on Ensembl has identified 21,394 protein coding genes.",

keywords = "chromosomal, European water vole, Arvicola amphibius, genome sequence",

author = "Carpenter, \{Angus I.\} and Michelle Smith and Craig Corton and Karen Oliver and Jason Skelton and Emma Betteridge and Jale Doulcan and Quail, \{Michael A.\} and McCarthy, \{Shane A.\} and \{Uliano Da Silva\}, Marcela and Kerstin Howe and James Torrance and Jonathan Wood and Sarah Pelan and Ying Sims and Tricomi, \{Francesca Floriana\} and Richard Challis and Jonathan Threlfall and Daniel Mead and Mark Blaxter",

note = "Angus Carpenter, Lecturer in Ecology \& Conservation, University of Cumbria, UK. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.",

year = "2021",

month = jun,

day = "24",

doi = "10.12688/wellcomeopenres.16753.1",

language = "English",

volume = "6",

pages = "162",

journal = "Wellcome Open Research",

issn = "2398-502X",

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Carpenter, AI, Smith, M, Corton, C, Oliver, K, Skelton, J, Betteridge, E, Doulcan, J, Quail, MA, McCarthy, SA, Uliano Da Silva, M, Howe, K, Torrance, J, Wood, J, Pelan, S, Sims, Y, Tricomi, FF, Challis, R, Threlfall, J, Mead, D & Blaxter, M 2021, 'The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758', Wellcome Open Research, vol. 6, pp. 162. https://doi.org/10.12688/wellcomeopenres.16753.1

TY - JOUR

T1 - The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758

AU - Carpenter, Angus I.

AU - Smith, Michelle

AU - Corton, Craig

AU - Oliver, Karen

AU - Skelton, Jason

AU - Betteridge, Emma

AU - Doulcan, Jale

AU - Quail, Michael A.

AU - McCarthy, Shane A.

AU - Uliano Da Silva, Marcela

AU - Howe, Kerstin

AU - Torrance, James

AU - Wood, Jonathan

AU - Pelan, Sarah

AU - Sims, Ying

AU - Tricomi, Francesca Floriana

AU - Challis, Richard

AU - Threlfall, Jonathan

AU - Mead, Daniel

AU - Blaxter, Mark

N1 - Angus Carpenter, Lecturer in Ecology & Conservation, University of Cumbria, UK. This is an open access work distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.

PY - 2021/6/24

Y1 - 2021/6/24

N2 - We present a genome assembly from an individual male Arvicola amphibius (the European water vole; Chordata; Mammalia; Rodentia; Cricetidae). The genome sequence is 2.30 gigabases in span. The majority of the assembly is scaffolded into 18 chromosomal pseudomolecules, including the X sex chromosome. Gene annotation of this assembly on Ensembl has identified 21,394 protein coding genes.

AB - We present a genome assembly from an individual male Arvicola amphibius (the European water vole; Chordata; Mammalia; Rodentia; Cricetidae). The genome sequence is 2.30 gigabases in span. The majority of the assembly is scaffolded into 18 chromosomal pseudomolecules, including the X sex chromosome. Gene annotation of this assembly on Ensembl has identified 21,394 protein coding genes.

KW - chromosomal

KW - European water vole

KW - Arvicola amphibius

KW - genome sequence

U2 - 10.12688/wellcomeopenres.16753.1

DO - 10.12688/wellcomeopenres.16753.1

M3 - Journal Article

SN - 2398-502X

VL - 6

SP - 162

JO - Wellcome Open Research

JF - Wellcome Open Research

ER -

The genome sequence of the European water vole, Arvicola amphibius Linnaeus 1758

Abstract

Keywords

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